I do it bit by bit, engine unit alone, supported by front and rear lower mounts then add the gearbox and finish with the top rear mounting plates. That rear top rocker cover stud is different from all the rest....the difference being a flat in the middle to aid removal and installation of the stud in situations where it comes close to the frame top tube. With no rocker box there is plenty of room, fully assembled motor is a tight squeeze.
BSA frames are far from perfect, leave all the mountings loose to get components to settle without strain. A custom spacer is usually required to bridge the gap between the frame lug and the lower rear mount on the primary chaincase. Then when all is happily in place a final nip up, Loctite on the threads, and it starts to look the part once more.
Preparing the fixings in advance, nice smooth running threads etc makes life easier for grovelling down in the dirt.....
Consider the breather exit while you have access. Some folks modify "The Hole" to accept a tube to direct oil and vapour to the chain, rather than just letting it vent.
Swarfy