GB. At least you found something that was not quite right. When measuring the springs yesterday I noticed that there were witness marks on the valve spring caps where they had rubbed on the underside of the rocker arms, so it's a bit tight for space in there anyway, and cylinder height, rocker box refacing and head skimming all alter the geometry from standard. Don't forget to check pushrods for a bow.
Swarfy.
Additional. Thinking about it, if the valve clearance was too big, the underside of the rocker would just touch the valve cap before the tappet contacts the stem, so maybe in this case the engine had been run with a rocker box just on the limit for mating face height.